So if you are using CHPC Utah, you can add the following lines to your ~/.tcshrc file. The first step to use glide as well as other related SCHRODINGER programs in unix environment is to have the SCHRIDONGER address in your path. The docking procedure with glide has some different steps: This tutorial is for a docking beginner and you can refer to the online user manuals if you are seeking more details or flexibility for any step. We will use both the ugly command-line approach and the graphical user interface maestro program throughout the docking procedure and we will see that there are advantages for both. This tutorial describes how to dock a library of small ligands on an RNA receptor (also applicable to protein receptors). Glide is a well-known ligand docking program developed by SCHRODINGER ( ).
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